It absolutely has to be "가방에서" Therefore, only 1) and 3) are correct. Both have the same meaning with a slightly different nuance. 1) to take out a sheet with a clear crease from the bag 3) to take out a sheet with a distinct crease on it from the bag PS: 뚜렷하게 is an adverb, and you should stick to the adjective 뚜렷한 since it refers to the "crease", and not to " to fold"

1. 가방에서 뚜렷하게 접은 자국이~ 2. 가방에서 뚜렷하게 접은 자국이~ 3. correct 4. 가방에서 접은 자국이 ~