'Done' is an adjective, so you'd say 'Are you done?'.

Firstly,I think the right answer should be " Have you done?".The sentence I wrote is the present perfect ense. Secondly,If you want to use past tense, you should change sentence (1) to "Did you do sth?" .Because "did"is a Auxiliary Verb ,so the real verb should use primary form. Finally,the last sentence is the passive voice,when you want to express sb. else has done sth. to you,and the subject is you,then you can use this kind of voice.